IL_4XEJ_082

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_082 not in the Motif Atlas

Homologous match to IL_5J7L_257

Geometric discrepancy: 0.1116

The information below is about IL_5J7L_257

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4XEJ|1|A23S|C|564
4XEJ|1|A23S|C|565
4XEJ|1|A23S|U|566
*
4XEJ|1|A23S|A|575
4XEJ|1|A23S|U|576
4XEJ|1|A23S|G|577

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL15

50S ribosomal protein L15

Chain AL20

50S ribosomal protein L20

Chain AL21

50S ribosomal protein L21

Chain AL32

50S ribosomal protein L32