IL_4XEJ_224

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4XEJ|1|B16S|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_224 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1452

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4XEJ|1|B16S|G|662
4XEJ|1|B16S|A|663
4XEJ|1|B16S|G|664
4XEJ|1|B16S|A|665
4XEJ|1|B16S|G|666
*
4XEJ|1|B16S|U|740
4XEJ|1|B16S|G|741
4XEJ|1|B16S|G|742
4XEJ|1|B16S|U|743

Current chains

Chain B16S

16S ribosomal RNA

Nearby chains

Chain BS06

30S ribosomal protein S6

Chain BS15

30S ribosomal protein S15

Chain BS18

30S ribosomal protein S18