IL_4XEJ_374
3D structure
- PDB id
- 4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IRES bound to bacterial Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.8 Å
Loop
- Sequence
- CCUCUG*CAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4XEJ_374 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3431
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4XEJ|1|B23S|C|2680
4XEJ|1|B23S|C|2681
4XEJ|1|B23S|U|2682
4XEJ|1|B23S|C|2683
4XEJ|1|B23S|U|2684
4XEJ|1|B23S|G|2685
*
4XEJ|1|B23S|C|2724
4XEJ|1|B23S|A|2725
4XEJ|1|B23S|U|2726
4XEJ|1|B23S|G|2727
Current chains
- Chain B23S
- 23S ribosomal RNA
Nearby chains
- Chain BL03
- 50S ribosomal protein L3
- Chain BL14
- 50S ribosomal protein L14
- Chain BL17
- 50S ribosomal protein L17
- Chain BL19
- 50S ribosomal protein L19
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