IL_4XEJ_402

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GAUGU*GCGC

Length

9 nucleotides

Bulged bases

4XEJ|1|A23S|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4XEJ_402 not in the Motif Atlas

Geometric match to IL_8C3A_438

Geometric discrepancy: 0.2598

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

4XEJ|1|A23S|G|1031
4XEJ|1|A23S|A|1032
4XEJ|1|A23S|U|1033
4XEJ|1|A23S|G|1034
4XEJ|1|A23S|U|1035
*
4XEJ|1|A23S|G|1120
4XEJ|1|A23S|C|1121
4XEJ|1|A23S|G|1122
4XEJ|1|A23S|C|1123

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL06

50S ribosomal protein L6

Chain AL16

50S ribosomal protein L16

Chain AL25

50S ribosomal protein L25