IL_4Y4O_083

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GUC*GGC

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Y4O_083 not in the Motif Atlas

Geometric match to IL_4WZM_001

Geometric discrepancy: 0.2071

The information below is about IL_4WZM_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4Y4O|1|1A|G|2123
4Y4O|1|1A|U|2124
4Y4O|1|1A|C|2125
*
4Y4O|1|1A|G|2208
4Y4O|1|1A|G|2209
4Y4O|1|1A|C|2210

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1I

50S ribosomal protein L9