IL_4YB1_005

3D structure

PDB id

4YB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP

Experimental method

X-RAY DIFFRACTION

Resolution

2.08 Å

Loop

Sequence

UAAAC*GUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YB1_005 not in the Motif Atlas

Geometric match to IL_1XJR_001

Geometric discrepancy: 0.3957

The information below is about IL_1XJR_001

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_34117.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4YB1|1|R|U|60
4YB1|1|R|A|61
4YB1|1|R|A|62
4YB1|1|R|A|63
4YB1|1|R|C|64
*
4YB1|1|R|G|77
4YB1|1|R|U|78
4YB1|1|R|A|79

Current chains

Chain R

RNA (91-MER)

Nearby chains