IL_5AJ0_123

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

5AJ0|1|A2|A|3717, 5AJ0|1|A2|A|3718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_123 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.1284

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5AJ0|1|A2|U|3675
5AJ0|1|A2|G|3676
*
5AJ0|1|A2|U|3716
5AJ0|1|A2|A|3717
5AJ0|1|A2|A|3718
5AJ0|1|A2|A|3719

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain B1

Small subunit ribosomal RNA; SSU rRNA