IL_5AJ0_223

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

5AJ0|1|B1|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_223 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1864

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

5AJ0|1|B1|G|665
5AJ0|1|B1|U|666
5AJ0|1|B1|U|667
5AJ0|1|B1|A|668
5AJ0|1|B1|A|669
5AJ0|1|B1|A|670
5AJ0|1|B1|A|671
*
5AJ0|1|B1|U|1161
5AJ0|1|B1|C|1162

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BX

40S ribosomal protein S23

Chain Ba

40S ribosomal protein S26