IL_5AJ0_235
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGCC*GAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_235 not in the Motif Atlas
- Homologous match to IL_4V88_430
- Geometric discrepancy: 0.1287
- The information below is about IL_4V88_430
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5AJ0|1|B1|G|928
5AJ0|1|B1|G|929
5AJ0|1|B1|C|930
5AJ0|1|B1|C|931
*
5AJ0|1|B1|G|1010
5AJ0|1|B1|A|1011
5AJ0|1|B1|A|1012
5AJ0|1|B1|U|1013
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain Ac
- 60S ribosomal protein L30
- Chain BB
- 40S ribosomal protein S3a
- Chain BN
- 40S ribosomal protein S13
- Chain Bb
- 40S ribosomal protein S27
Coloring options: