IL_5AJ0_265

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAC*GCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_265 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.3217

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5AJ0|1|B1|C|1412
5AJ0|1|B1|G|1413
5AJ0|1|B1|A|1414
5AJ0|1|B1|C|1415
*
5AJ0|1|B1|G|1422
5AJ0|1|B1|C|1423
5AJ0|1|B1|G|1424
5AJ0|1|B1|G|1425

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BQ

40S ribosomal protein S16

Chain BT

40S ribosomal protein S19