IL_5AJ0_273
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_273 not in the Motif Atlas
- Homologous match to IL_4V88_466
- Geometric discrepancy: 0.4161
- The information below is about IL_4V88_466
- Detailed Annotation
- Non canonical cWW and near pair
- Broad Annotation
- Non canonical cWW and near pair
- Motif group
- IL_90170.1
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5AJ0|1|B1|C|1708
5AJ0|1|B1|G|1709
5AJ0|1|B1|C|1710
5AJ0|1|B1|U|1711
*
5AJ0|1|B1|A|1822
5AJ0|1|B1|A|1823
5AJ0|1|B1|A|1824
5AJ0|1|B1|A|1825
5AJ0|1|B1|G|1826
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain BX
- 40S ribosomal protein S23
- Chain Be
- 40S ribosomal protein S30
- Chain Bx
- mRNA
Coloring options: