IL_5AJ0_284

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_284 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3287

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5AJ0|1|Bw|C|49
5AJ0|1|Bw|U|50
5AJ0|1|Bw|U|51
5AJ0|1|Bw|G|52
*
5AJ0|1|Bw|C|62
5AJ0|1|Bw|G|63
5AJ0|1|Bw|A|64
5AJ0|1|Bw|G|65

Current chains

Chain Bw

tRNA

Nearby chains

Chain Ao

60S ribosomal protein L36a

Chain Au

60S ribosomal protein L10a