IL_5AKA_081

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5AKA|1|B|A|1801, 5AKA|1|B|C|1816, 5AKA|1|B|U|1820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AKA_081 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.064

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5AKA|1|B|U|1798
5AKA|1|B|G|1799
5AKA|1|B|C|1800
5AKA|1|B|A|1801
5AKA|1|B|A|1802
5AKA|1|B|A|1803
5AKA|1|B|C|1804
*
5AKA|1|B|G|1813
5AKA|1|B|G|1814
5AKA|1|B|A|1815
5AKA|1|B|C|1816
5AKA|1|B|G|1817
5AKA|1|B|U|1818
5AKA|1|B|A|1819
5AKA|1|B|U|1820
5AKA|1|B|A|1821

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2