3D structure

PDB id
5APN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.91 Å

Loop

Sequence
UUAAG*CUAUA
Length
10 nucleotides
Bulged bases
5APN|1|5|U|1331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5APN_048 not in the Motif Atlas
Homologous match to IL_5TBW_048
Geometric discrepancy: 0.1332
The information below is about IL_5TBW_048
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

5APN|1|5|U|1167
5APN|1|5|U|1168
5APN|1|5|A|1169
5APN|1|5|A|1170
5APN|1|5|G|1171
*
5APN|1|5|C|1328
5APN|1|5|U|1329
5APN|1|5|A|1330
5APN|1|5|U|1331
5APN|1|5|A|1332

Current chains

Chain 5
25S rRNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain F
60S ribosomal protein L7-A
Chain Q
60S ribosomal protein L18-A
Chain e
60S ribosomal protein L32
Chain f
60S ribosomal protein L33-A

Coloring options:


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