IL_5APN_069

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

5APN|1|5|U|1820, 5APN|1|5|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APN_069 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.2404

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

5APN|1|5|G|1623
5APN|1|5|G|1624
5APN|1|5|A|1625
*
5APN|1|5|U|1818
5APN|1|5|U|1819
5APN|1|5|U|1820
5APN|1|5|U|1821
5APN|1|5|C|1822

Current chains

Chain 5

25S rRNA

Nearby chains

Chain g

60S ribosomal protein L34-A