IL_5APN_143

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

5APN|1|5|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5APN_143 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.1462

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5APN|1|5|G|3328
5APN|1|5|U|3329
5APN|1|5|A|3330
*
5APN|1|5|U|3373
5APN|1|5|U|3374
5APN|1|5|A|3375
5APN|1|5|A|3376
5APN|1|5|G|3377
5APN|1|5|C|3378

Current chains

Chain 5

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A