IL_5DM6_008

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAAG*CGAACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_008 not in the Motif Atlas

Homologous match to IL_7A0S_008

Geometric discrepancy: 0.3108

The information below is about IL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.6

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5DM6|1|X|C|292
5DM6|1|X|A|293
5DM6|1|X|A|294
5DM6|1|X|G|295
*
5DM6|1|X|C|343
5DM6|1|X|G|344
5DM6|1|X|A|345
5DM6|1|X|A|346
5DM6|1|X|C|347
5DM6|1|X|G|348

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L24