IL_5DM6_035

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_035 not in the Motif Atlas

Geometric match to IL_7A0S_034

Geometric discrepancy: 0.0814

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

5DM6|1|X|U|1004
5DM6|1|X|C|1005
5DM6|1|X|C|1006
5DM6|1|X|C|1007
5DM6|1|X|U|1008
5DM6|1|X|A|1009
5DM6|1|X|A|1010
5DM6|1|X|A|1011
*
5DM6|1|X|U|1150
5DM6|1|X|A|1151

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20