IL_5DM6_053

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGAG*CGUUGAAA

Length

13 nucleotides

Bulged bases

5DM6|1|X|U|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_053 not in the Motif Atlas

Homologous match to IL_7A0S_050

Geometric discrepancy: 0.4973

The information below is about IL_7A0S_050

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_69229.3

Basepair signature

cWW-L-tSH-L-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5DM6|1|X|U|1412
5DM6|1|X|G|1413
5DM6|1|X|G|1414
5DM6|1|X|A|1415
5DM6|1|X|G|1416
*
5DM6|1|X|C|1582
5DM6|1|X|G|1583
5DM6|1|X|U|1584
5DM6|1|X|U|1585
5DM6|1|X|G|1586
5DM6|1|X|A|1587
5DM6|1|X|A|1588
5DM6|1|X|A|1589

Current chains

Chain X

23S ribosomal RNA

Nearby chains