IL_5DM6_066

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

5DM6|1|X|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_066 not in the Motif Atlas

Geometric match to IL_7A0S_063

Geometric discrepancy: 0.0859

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5DM6|1|X|C|1686
5DM6|1|X|G|1687
5DM6|1|X|U|1688
5DM6|1|X|A|1689
5DM6|1|X|A|1690
5DM6|1|X|C|1691
*
5DM6|1|X|G|1696
5DM6|1|X|A|1697
5DM6|1|X|A|1698
5DM6|1|X|G|1699
5DM6|1|X|A|1700
5DM6|1|X|A|1701
5DM6|1|X|G|1702

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2