IL_5DM6_072

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUCAAG*UGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_072 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.321

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5DM6|1|X|G|1850
5DM6|1|X|U|1851
5DM6|1|X|C|1852
5DM6|1|X|A|1853
5DM6|1|X|A|1854
5DM6|1|X|G|1855
*
5DM6|1|X|U|1887
5DM6|1|X|G|1888
5DM6|1|X|A|1889
5DM6|1|X|A|1890
5DM6|1|X|G|1891
5DM6|1|X|C|1892

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2