IL_5DM6_106
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUCC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5DM6|1|X|U|2689, 5DM6|1|X|C|2690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM6_106 not in the Motif Atlas
- Homologous match to IL_7A0S_096
- Geometric discrepancy: 0.1002
- The information below is about IL_7A0S_096
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_82016.1
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
5DM6|1|X|U|2687
5DM6|1|X|C|2688
5DM6|1|X|U|2689
5DM6|1|X|C|2690
5DM6|1|X|C|2691
*
5DM6|1|X|G|2718
5DM6|1|X|G|2719
5DM6|1|X|U|2720
5DM6|1|X|A|2721
5DM6|1|X|G|2722
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L17
- Chain M
- 50S ribosomal protein L19
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