IL_5FKD_006

3D structure

PDB id

5FKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGAG*CGAAGAUC

Length

13 nucleotides

Bulged bases

5FKD|1|A|A|34||||7_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FKD_006 not in the Motif Atlas

Geometric match to IL_4GXY_005

Geometric discrepancy: 0.1998

The information below is about IL_4GXY_005

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5FKD|1|A|G|17||||7_555
5FKD|1|A|A|18||||7_555
5FKD|1|A|G|19||||7_555
5FKD|1|A|A|20||||7_555
5FKD|1|A|G|21||||7_555
*
5FKD|1|A|C|31||||7_555
5FKD|1|A|G|32||||7_555
5FKD|1|A|A|33||||7_555
5FKD|1|A|A|34||||7_555
5FKD|1|A|G|35||||7_555
5FKD|1|A|A|36||||7_555
5FKD|1|A|U|37||||7_555
5FKD|1|A|C|38||||7_555

Current chains

Chain A

SAM-I RIBOSWITCH

Nearby chains