IL_5FLX_030

3D structure

PDB id

5FLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 40S HCV-IRES complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5FLX_030 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2407

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5FLX|1|1|U|566
5FLX|1|1|C|567
5FLX|1|1|C|568
5FLX|1|1|A|569
*
5FLX|1|1|U|581
5FLX|1|1|U|582
5FLX|1|1|A|583
5FLX|1|1|A|584

Current chains

Chain 1

18S RRNA

Nearby chains

Chain J

40S RIBOSOMAL PROTEIN S9

Chain Y

40S RIBOSOMAL PROTEIN S24