IL_5FLX_033
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 5FLX|1|1|A|628, 5FLX|1|1|U|630
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FLX_033 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1697
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5FLX|1|1|G|611
5FLX|1|1|U|612
5FLX|1|1|G|613
5FLX|1|1|C|614
5FLX|1|1|C|615
5FLX|1|1|A|616
5FLX|1|1|G|617
*
5FLX|1|1|C|624
5FLX|1|1|G|625
5FLX|1|1|G|626
5FLX|1|1|U|627
5FLX|1|1|A|628
5FLX|1|1|A|629
5FLX|1|1|U|630
5FLX|1|1|U|631
5FLX|1|1|C|632
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain D
- 40S RIBOSOMAL PROTEIN S3
- Chain X
- 40S RIBOSOMAL PROTEIN S23
- Chain e
- 40S RIBOSOMAL PROTEIN S30
- Chain z
- Internal ribosome entry site; IRES
Coloring options: