IL_5FLX_048
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 5FLX|1|1|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FLX_048 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.1749
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5FLX|1|1|C|931
5FLX|1|1|G|932
5FLX|1|1|G|933
5FLX|1|1|G|934
5FLX|1|1|G|935
*
5FLX|1|1|C|1007
5FLX|1|1|A|1008
5FLX|1|1|A|1009
5FLX|1|1|G|1010
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain B
- 40S RIBOSOMAL PROTEIN S3A
- Chain N
- 40S RIBOSOMAL PROTEIN S13
- Chain a
- 40S RIBOSOMAL PROTEIN S26
Coloring options: