IL_5FLX_050
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 5FLX|1|1|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FLX_050 not in the Motif Atlas
- Geometric match to IL_7A0S_004
- Geometric discrepancy: 0.2713
- The information below is about IL_7A0S_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5FLX|1|1|G|952
5FLX|1|1|C|953
5FLX|1|1|U|954
5FLX|1|1|A|955
5FLX|1|1|G|956
*
5FLX|1|1|C|967
5FLX|1|1|U|968
5FLX|1|1|U|969
5FLX|1|1|G|970
5FLX|1|1|G|971
5FLX|1|1|A|972
5FLX|1|1|C|973
5FLX|1|1|C|974
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain B
- 40S RIBOSOMAL PROTEIN S3A
- Chain O
- 40S RIBOSOMAL PROTEIN S14
Coloring options: