IL_5FLX_057
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FLX_057 not in the Motif Atlas
- Geometric match to IL_4LFB_034
- Geometric discrepancy: 0.1306
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5FLX|1|1|G|1168
5FLX|1|1|G|1169
5FLX|1|1|A|1170
5FLX|1|1|G|1171
5FLX|1|1|U|1172
5FLX|1|1|A|1173
5FLX|1|1|U|1174
5FLX|1|1|G|1175
*
5FLX|1|1|U|1186
5FLX|1|1|G|1187
5FLX|1|1|A|1188
5FLX|1|1|A|1189
5FLX|1|1|A|1190
5FLX|1|1|C|1191
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain X
- 40S RIBOSOMAL PROTEIN S23
Coloring options: