IL_5FLX_060
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 5FLX|1|1|C|1215, 5FLX|1|1|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5FLX_060 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.1714
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
5FLX|1|1|A|1214
5FLX|1|1|C|1215
5FLX|1|1|C|1216
5FLX|1|1|A|1217
*
5FLX|1|1|U|1681
5FLX|1|1|C|1682
5FLX|1|1|C|1683
5FLX|1|1|C|1684
5FLX|1|1|U|1685
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain F
- 40S RIBOSOMAL PROTEIN S5
- Chain Q
- 40S RIBOSOMAL PROTEIN S16
- Chain U
- 40S RIBOSOMAL PROTEIN S20
- Chain a
- 40S RIBOSOMAL PROTEIN S26
- Chain c
- 40S RIBOSOMAL PROTEIN S28
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