IL_5G2X_004

3D structure

PDB id

5G2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure a of Group II Intron Complexed with its Reverse Transcriptase

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAAG,CUUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5G2X_004 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2071

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5G2X|1|A|U|20
5G2X|1|A|A|21
5G2X|1|A|A|22
5G2X|1|A|G|23
*
5G2X|1|A|C|376
5G2X|1|A|U|377
5G2X|1|A|U|378
5G2X|1|A|A|379

Current chains

Chain A

GROUP II INTRON

Nearby chains