IL_5GAK_021
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 5GAK|1|1|U|534, 5GAK|1|1|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAK_021 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.1929
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5GAK|1|1|G|531
5GAK|1|1|A|532
5GAK|1|1|A|533
5GAK|1|1|U|534
5GAK|1|1|G|535
5GAK|1|1|U|536
5GAK|1|1|A|537
5GAK|1|1|G|538
*
5GAK|1|1|U|553
5GAK|1|1|A|554
5GAK|1|1|U|555
5GAK|1|1|U|556
5GAK|1|1|A|557
5GAK|1|1|U|558
5GAK|1|1|A|559
5GAK|1|1|G|560
5GAK|1|1|C|561
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain O
- 60S ribosomal protein L14-B
- Chain U
- 60S ribosomal protein L20-A
Coloring options: