IL_5GAK_035
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 5GAK|1|1|G|908, 5GAK|1|1|A|920, 5GAK|1|1|A|921, 5GAK|1|1|U|922
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAK_035 not in the Motif Atlas
- Homologous match to IL_5TBW_033
- Geometric discrepancy: 0.1802
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5GAK|1|1|G|907
5GAK|1|1|G|908
5GAK|1|1|G|909
*
5GAK|1|1|U|919
5GAK|1|1|A|920
5GAK|1|1|A|921
5GAK|1|1|U|922
5GAK|1|1|C|923
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L2-A
- Chain P
- 60S ribosomal protein L15-A
- Chain R
- 60S ribosomal protein L17-A
- Chain l
- 60S ribosomal protein L37-A
- Chain z
- nascent polypeptide chain
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