IL_5GAK_045

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

5GAK|1|1|C|1016, 5GAK|1|1|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_045 not in the Motif Atlas

Homologous match to IL_5TBW_043

Geometric discrepancy: 0.4448

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

5GAK|1|1|G|1013
5GAK|1|1|U|1014
5GAK|1|1|U|1015
5GAK|1|1|C|1016
5GAK|1|1|C|1017
5GAK|1|1|G|1018
*
5GAK|1|1|U|1034
5GAK|1|1|G|1035
5GAK|1|1|A|1036
5GAK|1|1|C|1037

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L5

Chain M

60S ribosomal protein L11-A