IL_5GAK_071

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_071 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.1991

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5GAK|1|1|U|1645
5GAK|1|1|G|1646
5GAK|1|1|A|1647
5GAK|1|1|A|1648
5GAK|1|1|U|1649
*
5GAK|1|1|A|1806
5GAK|1|1|G|1807
5GAK|1|1|G|1808
5GAK|1|1|A|1809
5GAK|1|1|A|1810

Current chains

Chain 1

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L2-A

Chain b

60S ribosomal protein L27-A

Chain i

60S ribosomal protein L34-A