IL_5GAK_119

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

5GAK|1|1|A|3142, 5GAK|1|1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5GAK_119 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.183

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5GAK|1|1|C|3004
5GAK|1|1|A|3005
5GAK|1|1|A|3006
5GAK|1|1|U|3007
*
5GAK|1|1|A|3139
5GAK|1|1|G|3140
5GAK|1|1|A|3141
5GAK|1|1|A|3142
5GAK|1|1|C|3143
5GAK|1|1|G|3144

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain Q

60S ribosomal protein L16-A