IL_5GAK_121
3D structure
- PDB id
- 5GAK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5GAK_121 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1439
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5GAK|1|1|C|3018
5GAK|1|1|U|3019
5GAK|1|1|U|3020
5GAK|1|1|A|3021
5GAK|1|1|G|3022
5GAK|1|1|U|3023
5GAK|1|1|A|3024
5GAK|1|1|C|3025
*
5GAK|1|1|G|3030
5GAK|1|1|G|3031
5GAK|1|1|A|3032
5GAK|1|1|A|3033
5GAK|1|1|C|3034
5GAK|1|1|A|3035
5GAK|1|1|G|3036
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L3
- Chain L
- 60S ribosomal protein L9-A
- Chain X
- 60S ribosomal protein L23-A
- Chain o
- Ubiquitin-60S ribosomal protein L40
Coloring options: