IL_5HCR_132
3D structure
- PDB id
- 5HCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5HCR|1|1a|A|516, 5HCR|1|1a|U|518, 5HCR|1|1a|A|519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5HCR_132 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1082
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5HCR|1|1a|G|499
5HCR|1|1a|U|500
5HCR|1|1a|G|501
5HCR|1|1a|C|502
5HCR|1|1a|C|503
5HCR|1|1a|A|504
5HCR|1|1a|G|505
*
5HCR|1|1a|C|512
5HCR|1|1a|G|513
5HCR|1|1a|G|514
5HCR|1|1a|U|515
5HCR|1|1a|A|516
5HCR|1|1a|A|517
5HCR|1|1a|U|518
5HCR|1|1a|A|519
5HCR|1|1a|C|520
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1c
- 30S ribosomal protein S3
- Chain 1d
- 30S ribosomal protein S4
- Chain 1l
- 30S ribosomal protein S12
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