IL_5HCR_253

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5HCR|1|2A|A|1959, 5HCR|1|2A|U|1965, 5HCR|1|2A|U|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5HCR_253 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.132

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

5HCR|1|2A|C|1955
5HCR|1|2A|G|1956
5HCR|1|2A|A|1957
5HCR|1|2A|A|1958
5HCR|1|2A|A|1959
5HCR|1|2A|U|1960
5HCR|1|2A|U|1961
5HCR|1|2A|C|1962
5HCR|1|2A|C|1963
5HCR|1|2A|U|1964
5HCR|1|2A|U|1965
5HCR|1|2A|G|1966
*
5HCR|1|2A|C|1982
5HCR|1|2A|C|1983
5HCR|1|2A|U|1984
5HCR|1|2A|G|1985

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA