IL_5IMR_008
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GGUGAC*GGCC
- Length
- 10 nucleotides
- Bulged bases
- 5IMR|1|A|G|129|||A, 5IMR|1|A|A|130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMR_008 not in the Motif Atlas
- Geometric match to IL_1D4R_003
- Geometric discrepancy: 0.3828
- The information below is about IL_1D4R_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5IMR|1|A|G|127
5IMR|1|A|G|128
5IMR|1|A|U|129
5IMR|1|A|G|129|||A
5IMR|1|A|A|130
5IMR|1|A|C|131
*
5IMR|1|A|G|231
5IMR|1|A|G|232
5IMR|1|A|C|233
5IMR|1|A|C|234
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain T
- 30S ribosomal protein S16
- Chain U
- 30S ribosomal protein S17
- Chain X
- 30S ribosomal protein S20
Coloring options: