3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
GGUGAC*GGCC
Length
10 nucleotides
Bulged bases
5IMR|1|A|G|129|||A, 5IMR|1|A|A|130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IMR_008 not in the Motif Atlas
Geometric match to IL_1D4R_003
Geometric discrepancy: 0.3828
The information below is about IL_1D4R_003
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

5IMR|1|A|G|127
5IMR|1|A|G|128
5IMR|1|A|U|129
5IMR|1|A|G|129|||A
5IMR|1|A|A|130
5IMR|1|A|C|131
*
5IMR|1|A|G|231
5IMR|1|A|G|232
5IMR|1|A|C|233
5IMR|1|A|C|234

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain T
30S ribosomal protein S16
Chain U
30S ribosomal protein S17
Chain X
30S ribosomal protein S20

Coloring options:


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