IL_5IMR_016

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCAAUG*UGAC

Length

10 nucleotides

Bulged bases

5IMR|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_016 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3804

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

5IMR|1|A|G|371
5IMR|1|A|C|372
5IMR|1|A|A|373
5IMR|1|A|A|374
5IMR|1|A|U|375
5IMR|1|A|G|376
*
5IMR|1|A|U|387
5IMR|1|A|G|388
5IMR|1|A|A|389
5IMR|1|A|C|390

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S16