IL_5IMR_025

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGU*AUACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_025 not in the Motif Atlas

Geometric match to IL_1XJR_001

Geometric discrepancy: 0.378

The information below is about IL_1XJR_001

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

5IMR|1|A|C|596
5IMR|1|A|G|597
5IMR|1|A|U|598
*
5IMR|1|A|A|640
5IMR|1|A|U|641
5IMR|1|A|A|642
5IMR|1|A|C|643
5IMR|1|A|G|644

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S8

Chain U

30S ribosomal protein S17