IL_5IMR_029
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GAGAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- 5IMR|1|A|A|665
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMR_029 not in the Motif Atlas
- Homologous match to IL_6CZR_141
- Geometric discrepancy: 0.3066
- The information below is about IL_6CZR_141
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
5IMR|1|A|G|662
5IMR|1|A|A|663
5IMR|1|A|G|664
5IMR|1|A|A|665
5IMR|1|A|G|666
*
5IMR|1|A|U|740
5IMR|1|A|G|741
5IMR|1|A|G|742
5IMR|1|A|U|743
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain J
- 30S ribosomal protein S6
- Chain S
- 30S ribosomal protein S15
- Chain V
- 30S ribosomal protein S18
Coloring options: