3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
GUGAAG*UGGAGGC
Length
13 nucleotides
Bulged bases
5IMR|1|D|G|728
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IMR_157 not in the Motif Atlas
Geometric match to IL_3FTF_001
Geometric discrepancy: 0.34
The information below is about IL_3FTF_001
Detailed Annotation
Quadruple sheared
Broad Annotation
No text annotation
Motif group
IL_06136.2
Basepair signature
cWW-tHS-cWW-tHS-tSH-tSH-cWW
Number of instances in this motif group
6

Unit IDs

5IMR|1|D|G|702
5IMR|1|D|U|703
5IMR|1|D|G|704
5IMR|1|D|A|705
5IMR|1|D|A|706
5IMR|1|D|G|707
*
5IMR|1|D|U|724
5IMR|1|D|G|725
5IMR|1|D|G|726
5IMR|1|D|A|727
5IMR|1|D|G|728
5IMR|1|D|G|729
5IMR|1|D|C|730

Current chains

Chain D
23S ribosomal RNA

Nearby chains

Chain a
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3109 s