IL_5IT8_286

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

5IT8|1|DA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IT8_286 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0545

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5IT8|1|DA|G|1031
5IT8|1|DA|A|1032
5IT8|1|DA|U|1033
5IT8|1|DA|G|1034
*
5IT8|1|DA|C|1121
5IT8|1|DA|G|1122
5IT8|1|DA|C|1123

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D5

50S ribosomal protein L36

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DN

50S ribosomal protein L16