IL_5J8B_034

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

5J8B|1|A|C|1040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_034 not in the Motif Atlas

Homologous match to IL_5J7L_276

Geometric discrepancy: 0.0904

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

5J8B|1|A|C|1039
5J8B|1|A|C|1040
5J8B|1|A|A|1041
*
5J8B|1|A|U|1204
5J8B|1|A|G|1205

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L30

Chain N

50S ribosomal protein L13

Chain U

50S ribosomal protein L20

Chain V

50S ribosomal protein L21