IL_5J8B_134
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5J8B|1|a|A|516, 5J8B|1|a|U|518, 5J8B|1|a|A|519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_134 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1686
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5J8B|1|a|G|499
5J8B|1|a|U|500
5J8B|1|a|G|501
5J8B|1|a|C|502
5J8B|1|a|C|503
5J8B|1|a|A|504
5J8B|1|a|G|505
*
5J8B|1|a|C|512
5J8B|1|a|G|513
5J8B|1|a|G|514
5J8B|1|a|U|515
5J8B|1|a|A|516
5J8B|1|a|A|517
5J8B|1|a|U|518
5J8B|1|a|A|519
5J8B|1|a|C|520
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain v
- mRNA
- Chain w
- Transfer RNA; tRNA
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