IL_5J8B_142

3D structure

PDB id

5J8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

5J8B|1|a|A|649

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J8B_142 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.0855

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5J8B|1|a|G|646
5J8B|1|a|A|647
5J8B|1|a|G|648
5J8B|1|a|A|649
5J8B|1|a|G|650
*
5J8B|1|a|U|724
5J8B|1|a|G|725
5J8B|1|a|G|726
5J8B|1|a|U|727

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain f

30S ribosomal protein S6

Chain o

30S ribosomal protein S15

Chain r

30S ribosomal protein S18