IL_5J8B_164
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGGAUU*AUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_164 not in the Motif Atlas
- Homologous match to IL_4LFB_055
- Geometric discrepancy: 0.0951
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85536.2
- Basepair signature
- cWW-tSH-L-R-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
5J8B|1|a|C|1285
5J8B|1|a|G|1286
5J8B|1|a|G|1287
5J8B|1|a|A|1288
5J8B|1|a|U|1289
5J8B|1|a|U|1290
*
5J8B|1|a|A|1311
5J8B|1|a|U|1312
5J8B|1|a|G|1313
5J8B|1|a|A|1314
5J8B|1|a|A|1315
5J8B|1|a|G|1316
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain m
- 30S ribosomal protein S13
- Chain u
- 30S ribosomal protein Thx
Coloring options: