IL_5J8B_179
3D structure
- PDB id
- 5J8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGUGAAC*GGGAG
- Length
- 13 nucleotides
- Bulged bases
- 5J8B|1|A|G|2152, 5J8B|1|A|U|2153
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J8B_179 not in the Motif Atlas
- Homologous match to IL_3U4M_004
- Geometric discrepancy: 0.4184
- The information below is about IL_3U4M_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
5J8B|1|A|C|2150
5J8B|1|A|U|2151
5J8B|1|A|G|2152
5J8B|1|A|U|2153
5J8B|1|A|G|2154
5J8B|1|A|A|2155
5J8B|1|A|A|2156
5J8B|1|A|C|2157
*
5J8B|1|A|G|2176
5J8B|1|A|G|2177
5J8B|1|A|G|2178
5J8B|1|A|A|2179
5J8B|1|A|G|2180
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L1
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