IL_5JCS_090
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CGGAAUUG*CGGAGAUG
- Length
- 16 nucleotides
- Bulged bases
- 5JCS|1|x|A|1715, 5JCS|1|x|U|1716, 5JCS|1|x|U|1717, 5JCS|1|x|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JCS_090 not in the Motif Atlas
- Geometric match to IL_3U4M_004
- Geometric discrepancy: 0.3876
- The information below is about IL_3U4M_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.9
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
5JCS|1|x|C|1711
5JCS|1|x|G|1712
5JCS|1|x|G|1713
5JCS|1|x|A|1714
5JCS|1|x|A|1715
5JCS|1|x|U|1716
5JCS|1|x|U|1717
5JCS|1|x|G|1718
*
5JCS|1|x|C|1726
5JCS|1|x|G|1727
5JCS|1|x|G|1728
5JCS|1|x|A|1729
5JCS|1|x|G|1730
5JCS|1|x|A|1731
5JCS|1|x|U|1732
5JCS|1|x|G|1733
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain Z
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain p
- 60S ribosomal protein L43-A
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